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5-Hydroxycytidine

CAT: 0804-HY-Z15868-03Size: 25 mgDry Ice: NoHazardous: No
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CAT#:0804-HY-Z15868-03Size:25 mg
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24/48H Stock Items & 2 to 6 Weeks non Stock Items.
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Description
5-Hydroxycytidine is the RNA modified nucleoside that can be found in the 23S rRNA of bacteria E. coli. 5-Hydroxycytidine modifies at the C2501 site, exhibits a higher modification level in stationary cells. 5-Hydroxycytidine exhibits a higher modification level in radiation resistant Radius than in E. coli[1].
CAS Number
39638-73-8
UNSPSC
12352005
Hazard Statement
H302-H315-H319-H335
Target
Nucleoside Antimetabolite/Analog
Related Pathways
Cell Cycle/DNA Damage
Applications
COVID-19-anti-virus
Field of Research
Infection
Smiles
O[C@@H]1[C@H](O)[C@@H](CO)O[C@H]1N2C(N=C(C(O)=C2)N)=O
Molecular Formula
C9H13N3O6
Molecular Weight
259.22
Precautions
P261-P264-P270-P271-P280-P302+P352-P304+P340-P305+P351+P338-P330-P362+P364-P403+P233-P405-P501
References & Citations
[1]Havelund JF, et al., Identification of 5-hydroxycytidine at position 2501 concludes characterization of modified nucleotides in E. coli 23S rRNA. J Mol Biol. 2011 Aug 19;411 (3) :529-36.
Shipping Conditions
Room temperature
Scientific Category
Reference compound1
Clinical Information
No Development Reported

Chemical Information

5-Hydroxycytidine
CAS Number39638-73-8
PubChem CID198207
IUPAC Name4-amino-1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-5-hydroxypyrimidin-2-one
Molecular FormulaC9H13N3O6
Molecular Weight259.22
XLogP-2.5
Topological Polar Surface Area149
Hydrogen Bond Donor Count5
Hydrogen Bond Acceptor Count6
Rotatable Bond Count2
Heavy Atom Count18
Formal Charge0
Complexity423
SMILES
C1=C(C(=NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)O)N)O
InChI
InChI=1S/C9H13N3O6/c10-7-3(14)1-12(9(17)11-7)8-6(16)5(15)4(2-13)18-8/h1,4-6,8,13-16H,2H2,(H2,10,11,17)/t4-,5-,6-,8-/m1/s1
InChIKey
MPPUDRFYDKDPBN-UAKXSSHOSA-N
Chemical Structure
2D Structure
2D structure of 5-Hydroxycytidine
CAS: 39638-73-8
CID: 198207
Formula: C9H13N3O6
MW: 259.22
Interactive 3D Structure
Loading 3D structure...
View on PubChemRaw 3D data
Computed Properties
PropertyValue
Molecular Weight259.22
XLogP3-2.5
Hydrogen Bond Donor Count5
Hydrogen Bond Acceptor Count6
Rotatable Bond Count2
Exact Mass259.08043514
Monoisotopic Mass259.08043514
Topological Polar Surface Area149 Ų
Heavy Atom Count18
Formal Charge0
Complexity423
Isotope Atom Count0
Defined Atom Stereocenter Count4
Undefined Atom Stereocenter Count0
Defined Bond Stereocenter Count0
Undefined Bond Stereocenter Count0
Covalently-Bonded Unit Count1
Compound Is CanonicalizedYes

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