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DdCTP

CAT: 0013-GTR19152920Size: 5 x 100 ulDry Ice: NoHazardous: No
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CAT#:0013-GTR19152920Size:5 x 100 ul
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Description
DdCTP
CAS Number
66004-77-1
Product Name Alternative
2',3'-Dideoxycytidine-5'-triphosphate, Lithium salt
Concentration
10 mM-11 mM
Purity
≥ 98% (HPLC)
Form
Solution in water; Color: colorless to slightly yellow; pH: 7.5 ± 0.5
Smiles
Nc1ccn (c (=O) n1) [C@@H]1O[C@H] (COP (=O) (O) OP (=O) (O) OP (=O) (O) O) CC1
Molecular Formula
C9H16N3O12P3
Molecular Weight
Theoretical MW: 451.16 g/mol (free acid) ; Detected MW: 450.99 g/mol (free acid)
Storage Conditions
Store at -20 °C, Short term exposure (up to 1 week cumulative) to ambient temperature possible.
Notes
For research use only.
Applications Notes
SNP: multiplexing by minisequencing; Multiplexed detection of alternatively spliced transcripts; Effect on reverse transcriptase of HIV-1; Molecular dynamic calculations of DNA-polymerase beta-ddCTP complex; Crystal structure with DNA-polymerase-I. Spectroscopic Propertie: λmax 271 nm, ε 8.9 L mmol-1 cm-1 (Tris-HCl, pH 7.5) .

Chemical Information

Ddctp

inhibits vesicular stomatitis virus RNA synthesis

CAS Number66004-77-1
PubChem CID119119
IUPAC Name[[(2S,5R)-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl] phosphono hydrogen phosphate
Molecular FormulaC9H16N3O12P3
Molecular Weight451.16
XLogP-5.5
Topological Polar Surface Area228
Hydrogen Bond Donor Count5
Hydrogen Bond Acceptor Count12
Rotatable Bond Count8
Heavy Atom Count27
Formal Charge0
Complexity792
SMILES
C1C[C@@H](O[C@@H]1COP(=O)(O)OP(=O)(O)OP(=O)(O)O)N2C=CC(=NC2=O)N
InChI
InChI=1S/C9H16N3O12P3/c10-7-3-4-12(9(13)11-7)8-2-1-6(22-8)5-21-26(17,18)24-27(19,20)23-25(14,15)16/h3-4,6,8H,1-2,5H2,(H,17,18)(H,19,20)(H2,10,11,13)(H2,14,15,16)/t6-,8+/m0/s1
InChIKey
ARLKCWCREKRROD-POYBYMJQSA-N
Chemical Structure
2D Structure
2D structure of Ddctp
CAS: 66004-77-1
CID: 119119
Formula: C9H16N3O12P3
MW: 451.16
Interactive 3D Structure
Loading 3D structure...
View on PubChemRaw 3D data
Computed Properties
PropertyValue
Molecular Weight451.16
XLogP3-5.5
Hydrogen Bond Donor Count5
Hydrogen Bond Acceptor Count12
Rotatable Bond Count8
Exact Mass450.99468395
Monoisotopic Mass450.99468395
Topological Polar Surface Area228 Ų
Heavy Atom Count27
Formal Charge0
Complexity792
Isotope Atom Count0
Defined Atom Stereocenter Count2
Undefined Atom Stereocenter Count0
Defined Bond Stereocenter Count0
Undefined Bond Stereocenter Count0
Covalently-Bonded Unit Count1
Compound Is CanonicalizedYes

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