NAI-N3

CAT: 0804-HY-103006-01Size: 5 mgDry Ice: NoHazardous: No

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CAT#:0804-HY-103006-01Size:5 mg

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Description

NAI-N3 is a RNA acylation reagent that enables RNA purification. NAI-N3 is a dual-function SHAPE (selective 2-hydroxyl acylation and profiling experiment) probe (RNA structure probe and enrichment) [1]. It contains an azide group and can undergo copper-catalyzed azide-alkyne cycloaddition (CuAAc) with molecules containing alkyne groups. It can also undergo ring strain-promoted alkyne-azide cycloaddition (SPAAC) with molecules containing DBCO or BCN groups.

CAS Number

1612756-29-2

UNSPSC

12352005

Hazard Statement

H242, H315, H319

Target

Biochemical Assay Reagents

Type

Reference compound

Related Pathways

Others

Field of Research

Others

Assay Protocol

https://www.medchemexpress.com/NAI-N3.html

Purity

99.93

Solubility

DMSO : 100 mg/mL (ultrasonic) |H2O : ≥ 16.67 mg/mL

Smiles

O=C(C1=CC=CN=C1CN=[N+]=[N-])N2C=CN=C2

Molecular Formula

C10H8N6O

Molecular Weight

228.21

Precautions

H242, H315, H319

References & Citations

[1]Flynn RA, et al. Transcriptome-wide interrogation of RNA secondary structure in living cells with icSHAPE. Nat Protoc. 2016 Feb;11 (2) :273-90.

Shipping Conditions

Room Temperature

Storage Conditions

4°C (Powder, sealed storage, away from moisture)

Scientific Category

Reference compound1

Clinical Information

No Development Reported

Chemical Information

2-(azidomethyl)-3-(1H-imidazole-1-carbonyl)pyridine

CAS Number	1612756-29-2
PubChem CID	131704490
IUPAC Name	[2-(azidomethyl)-3-pyridinyl]-imidazol-1-ylmethanone
Molecular Formula	C10H8N6O
Molecular Weight	228.21
XLogP	1.4
Topological Polar Surface Area	62.1
Hydrogen Bond Donor Count	0
Hydrogen Bond Acceptor Count	5
Rotatable Bond Count	3
Heavy Atom Count	17
Formal Charge	0
Complexity	327

SMILES

C1=CC(=C(N=C1)CN=[N+]=[N-])C(=O)N2C=CN=C2

InChI

InChI=1S/C10H8N6O/c11-15-14-6-9-8(2-1-3-13-9)10(17)16-5-4-12-7-16/h1-5,7H,6H2

InChIKey

QPSQVTFTPHUCEH-UHFFFAOYSA-N

Chemical Structure

2D Structure

CAS: 1612756-29-2

CID: 131704490

Formula: C10H8N6O

MW: 228.21

Interactive 3D Structure

Loading 3D structure...

View on PubChem Raw 3D data

Computed Properties

Property	Value
Molecular Weight	228.21
XLogP3	1.4
Hydrogen Bond Donor Count	0
Hydrogen Bond Acceptor Count	5
Rotatable Bond Count	3
Exact Mass	228.07595890
Monoisotopic Mass	228.07595890
Topological Polar Surface Area	62.1 Å²
Heavy Atom Count	17
Formal Charge	0
Complexity	327
Isotope Atom Count	0
Defined Atom Stereocenter Count	0
Undefined Atom Stereocenter Count	0
Defined Bond Stereocenter Count	0
Undefined Bond Stereocenter Count	0
Covalently-Bonded Unit Count	1
Compound Is Canonicalized	Yes

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NAI-N3

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