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5'-DMTr-T-Methyl phosphonamidite

CAT: 0931-TNU1462-01Size: 10 mgDry Ice: NoHazardous: No
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CAT#:0931-TNU1462-01Size:10 mg
Selected
24/48H Stock Items & 2 to 6 Weeks non Stock Items.
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CAS Number
114079-04-8
Target
Others, DNA/RNA Synthesis
Related Pathways
DNA Damage/DNA Repair, Cell Cycle/Checkpoint, Others
Bioactivity
5'-DMTr-T-Methyl phosphonamidite is a nucleoside derivative (phosphonamidite) .
Smiles
C(OC[C@@H]1[C@@H](OP(N(C(C)C)C(C)C)C)C[C@@H](O1)N2C(=O)NC(=O)C(C)=C2)(C3=CC=C(OC)C=C3)(C4=CC=C(OC)C=C4)C5=CC=CC=C5
Molecular Formula
C38H48N3O7P
Molecular Weight
689.78
Shipping Conditions
Ice Packs
Storage Temperature
-20°C

Chemical Information

5'-DMTr-T-Methyl phosphonamidite
CAS Number114079-04-8
PubChem CID13844750
IUPAC Name1-[(2R,4S,5R)-5-[[bis(4-methoxyphenyl)-phenylmethoxy]methyl]-4-[[di(propan-2-yl)amino]-methylphosphanyl]oxyoxolan-2-yl]-5-methylpyrimidine-2,4-dione
Molecular FormulaC38H48N3O7P
Molecular Weight689.8
XLogP5.9
Topological Polar Surface Area98.8
Hydrogen Bond Donor Count1
Hydrogen Bond Acceptor Count8
Rotatable Bond Count14
Heavy Atom Count49
Formal Charge0
Complexity1080
SMILES
CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COC(C3=CC=CC=C3)(C4=CC=C(C=C4)OC)C5=CC=C(C=C5)OC)OP(C)N(C(C)C)C(C)C
InChI
InChI=1S/C38H48N3O7P/c1-25(2)41(26(3)4)49(8)48-33-22-35(40-23-27(5)36(42)39-37(40)43)47-34(33)24-46-38(28-12-10-9-11-13-28,29-14-18-31(44-6)19-15-29)30-16-20-32(45-7)21-17-30/h9-21,23,25-26,33-35H,22,24H2,1-8H3,(H,39,42,43)/t33-,34+,35+,49?/m0/s1
InChIKey
VWSNRSNBUDOZEA-KBUNAWGSSA-N
Chemical Structure
2D Structure
2D structure of 5'-DMTr-T-Methyl phosphonamidite
CAS: 114079-04-8
CID: 13844750
Formula: C38H48N3O7P
MW: 689.8
Interactive 3D Structure
Loading 3D structure...
View on PubChemRaw 3D data
Computed Properties
PropertyValue
Molecular Weight689.8
XLogP35.9
Hydrogen Bond Donor Count1
Hydrogen Bond Acceptor Count8
Rotatable Bond Count14
Exact Mass689.32298788
Monoisotopic Mass689.32298788
Topological Polar Surface Area98.8 Ų
Heavy Atom Count49
Formal Charge0
Complexity1080
Isotope Atom Count0
Defined Atom Stereocenter Count3
Undefined Atom Stereocenter Count1
Defined Bond Stereocenter Count0
Undefined Bond Stereocenter Count0
Covalently-Bonded Unit Count1
Compound Is CanonicalizedYes

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Alternative Products

CatalogName
HY-1540345'-DMTr-T-Methyl phosphonamidite
MBS58270575'-DMTr-dA(Bz)-Methyl phosphonamidite
MBS58270505'-DMTr-dG(iBu) -Methyl phosphonamidite
GTR19214011-015'-O-DMTr-dU-methyl phosphonamidite
HY-1540625'-DMTr-dA (Bz) -Methyl phosphonamidite
HY-1540165'-DMTr-dG (iBu) -Methyl phosphonamidite
MBS58270665'-O-DMTr-2'-OMeU-methyl phosphonamidite
GTR19213961-015'-DMTr-3'dA (Bz) -methyl phosphonamidite
HY-1542135’-O-DMTr-5-MedC (Ac) -methyl phosphonamidite
MBS58271095'-O-DMTr-5-MedC(Ac)-methyl phosphonamidite

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