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Cy3 phosphoramidite

CAT: 0804-HY-D2244Size: 1 EachDry Ice: NoHazardous: No
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CAT#:0804-HY-D2244Size:1 Each
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Description
Cy3 phosphoramidite is a fluorescent dye for oligonucleotide labeling.
CAS Number
182873-76-3
UNSPSC
12171500
Target
Fluorescent Dye
Type
Dye Reagents
Related Pathways
Others
Field of Research
Others
Assay Protocol
https://www.medchemexpress.com/cy3-phosphoramidite.html
Solubility
10 mM in DMSO
Smiles
N#CCCOP(N(C(C)C)C(C)C)OCCCN1C2=C(C(C)(C)/C1=C\C=C\C3=[N+](CCCOC(C4=CC=CC=C4)(C5=CC=C(C=C5)OC)C6=CC=CC=C6)C7=C(C3(C)C)C=CC=C7)C=CC=C2.[Cl-]
Molecular Formula
C58H70ClN4O4P
Molecular Weight
953.63
References & Citations
[1]Kekić T, et al. Sequence-dependence of Cy3 and Cy5 dyes in 3' terminally-labeled single-stranded DNA. Sci Rep. 2022;12 (1) :14803. Published 2022 Aug 31.
Shipping Conditions
Room temperature
Scientific Category
Dye Reagents
Clinical Information
No Development Reported

Chemical Information

Cy3 Phosphoramidite
CAS Number182873-76-3
PubChem CID86580413
IUPAC Name3-[[di(propan-2-yl)amino]-[3-[2-[(E,3Z)-3-[1-[3-[(4-methoxyphenyl)-diphenylmethoxy]propyl]-3,3-dimethylindol-2-ylidene]prop-1-enyl]-3,3-dimethylindol-1-ium-1-yl]propoxy]phosphanyl]oxypropanenitrile chloride
Molecular FormulaC58H70ClN4O4P
Molecular Weight953.6
Topological Polar Surface Area70.2
Hydrogen Bond Donor Count0
Hydrogen Bond Acceptor Count8
Rotatable Bond Count22
Heavy Atom Count68
Formal Charge0
Complexity1650
SMILES
CC(C)N(C(C)C)P(OCCC[N+]1=C(C(C2=CC=CC=C21)(C)C)/C=C/C=C\3/C(C4=CC=CC=C4N3CCCOC(C5=CC=CC=C5)(C6=CC=CC=C6)C7=CC=C(C=C7)OC)(C)C)OCCC#N.[Cl-]
InChI
InChI=1S/C58H70N4O4P.ClH/c1-44(2)62(45(3)4)67(65-42-21-38-59)66-43-23-40-61-53-31-19-17-29-51(53)57(7,8)55(61)33-20-32-54-56(5,6)50-28-16-18-30-52(50)60(54)39-22-41-64-58(46-24-12-10-13-25-46,47-26-14-11-15-27-47)48-34-36-49(63-9)37-35-48;/h10-20,24-37,44-45H,21-23,39-43H2,1-9H3;1H/q+1;/p-1
InChIKey
DQXAVRZQYYKELZ-UHFFFAOYSA-M
Chemical Structure
2D Structure
2D structure of Cy3 Phosphoramidite
CAS: 182873-76-3
CID: 86580413
Formula: C58H70ClN4O4P
MW: 953.6
Interactive 3D Structure
Loading 3D structure...
View on PubChemRaw 3D data
Computed Properties
PropertyValue
Molecular Weight953.6
Hydrogen Bond Donor Count0
Hydrogen Bond Acceptor Count8
Rotatable Bond Count22
Exact Mass952.4823214
Monoisotopic Mass952.4823214
Topological Polar Surface Area70.2 Ų
Heavy Atom Count68
Formal Charge0
Complexity1650
Isotope Atom Count0
Defined Atom Stereocenter Count0
Undefined Atom Stereocenter Count1
Defined Bond Stereocenter Count2
Undefined Bond Stereocenter Count0
Covalently-Bonded Unit Count2
Compound Is CanonicalizedYes

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