CY5-YNE

CAT: 0013-GTR19340494-02Size: 5 mgDry Ice: NoHazardous: No

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CAT#:0013-GTR19340494-02Size:5 mg

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Description

CY5-YNE is a derivative of the amine-reactive cyanine dye CY5, featuring excitation/emission at 650/670 nm. It is widely employed for labeling biomolecules in fluorescence imaging, flow cytometry, and both in vitro and in vivo tracking applications.

CAS Number

1345823-20-2

Product Name Alternative

CY5 YNE, CY5YNE, CY-5-YNE, CY5-YNE, Sulfo-Cyanine5-alkyne

Purity

99.98% (May vary between batches)

Solubility

DMSO:≥ 34 mg/mL

Molecular Weight

693.87

Storage Conditions

-20°C

Notes

For research use only.

Chemical Information

2-((1E,3E,5E)-5-(3,3-dimethyl-1-(6-oxo-6-(prop-2-yn-1-ylamino)hexyl)-5-sulfoindolin-2-ylidene)penta-1,3-dien-1-yl)-1-ethyl-3,3-dimethyl-3H-indol-1-ium-5-sulfonate

CAS Number	1345823-20-2
PubChem CID	132989613
IUPAC Name	2-[5-[3,3-dimethyl-1-[6-oxo-6-(prop-2-ynylamino)hexyl]-5-sulfoindol-1-ium-2-yl]penta-2,4-dienylidene]-1-ethyl-3,3-dimethylindole-5-sulfonate
Molecular Formula	C36H43N3O7S2
Molecular Weight	693.9
XLogP	4.4
Topological Polar Surface Area	164
Hydrogen Bond Donor Count	2
Hydrogen Bond Acceptor Count	8
Rotatable Bond Count	12
Heavy Atom Count	48
Formal Charge	0
Complexity	1570

SMILES

CCN1C2=C(C=C(C=C2)S(=O)(=O)[O-])C(C1=CC=CC=CC3=[N+](C4=C(C3(C)C)C=C(C=C4)S(=O)(=O)O)CCCCCC(=O)NCC#C)(C)C

InChI

InChI=1S/C36H43N3O7S2/c1-7-22-37-34(40)17-13-10-14-23-39-31-21-19-27(48(44,45)46)25-29(31)36(5,6)33(39)16-12-9-11-15-32-35(3,4)28-24-26(47(41,42)43)18-20-30(28)38(32)8-2/h1,9,11-12,15-16,18-21,24-25H,8,10,13-14,17,22-23H2,2-6H3,(H2-,37,40,41,42,43,44,45,46)

InChIKey

SDCASIAEYVOHMO-UHFFFAOYSA-N

Chemical Structure

2D Structure

CAS: 1345823-20-2

CID: 132989613

Formula: C36H43N3O7S2

MW: 693.9

Interactive 3D Structure

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View on PubChem Raw 3D data

Computed Properties

Property	Value
Molecular Weight	693.9
XLogP3	4.4
Hydrogen Bond Donor Count	2
Hydrogen Bond Acceptor Count	8
Rotatable Bond Count	12
Exact Mass	693.25424307
Monoisotopic Mass	693.25424307
Topological Polar Surface Area	164 Å²
Heavy Atom Count	48
Formal Charge	0
Complexity	1570
Isotope Atom Count	0
Defined Atom Stereocenter Count	0
Undefined Atom Stereocenter Count	0
Defined Bond Stereocenter Count	0
Undefined Bond Stereocenter Count	3
Covalently-Bonded Unit Count	1
Compound Is Canonicalized	Yes

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GTR19277397-01	BB-Cl-Yne
GTR19275226-01	6-Bromohex-1-yne
GTR19272639-01	7-Bromohept-1-yne
GTR19268522-01	Nonadecynoic acid (18-yne)
GTR19192047-01	Nat-20 (S) -yne
GTR19276460-01	6-Iodohex-1-yne

Alternative Products

Catalog	Name
C8303-5.1	CY5-YNE
T211443-01	CY5-YNE triethylamine
HY-D0820A	CY5-YNE (triethylamine)
T202279-01	Cy5-Yne triethylamine salt
C8290-5	CY3-YNE
T203712-01	ML162-yne
MBS5771752	Cy7-YNE
OR1007252-01	MalAM-yne
T212589-01	Yne-ACR
574230	BB-Cl-Yne

CY5-YNE

Chemical Information

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