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5'-O-DMT-N2-DMF-dG

CAT: 0013-GTR19222159-01Size: 100 mgDry Ice: NoHazardous: No
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CAT#:0013-GTR19222159-01Size:100 mg
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Description
This modified ribonucleoside, 5'-O-DMT-2'-O-TBDMS-rI, is a key phosphoramidite building block used in the solid-phase synthesis of oligonucleotides for research. It enables the study of RNA structure, function, and interactions in both in vitro biochemical assays and cellular research applications.
CAS Number
40094-22-2
Field of Research
Cell Biology, Molecular Biology, Musculoskeletal & Connective Tissue Research
Smiles
COc1ccc (cc1) C (OC[C@H]1O[C@H] (C[C@@H]1O) n1cnc2c1nc (\N=C/N (C) C) [nH]c2=O) (c1ccccc1) c1ccc (OC) cc1
Molecular Formula
C34H36N6O6
Molecular Weight
624.698
Storage Conditions
-20°C
Notes
For research use only.

Chemical Information

5'-O-DMT-N2-DMF-dG
CAS Number40094-22-2
PubChem CID136407412
IUPAC NameN'-[9-[(2R,4S,5R)-5-[[bis(4-methoxyphenyl)-phenylmethoxy]methyl]-4-hydroxyoxolan-2-yl]-6-oxo-1H-purin-2-yl]-N,N-dimethylmethanimidamide
Molecular FormulaC34H36N6O6
Molecular Weight624.7
XLogP3.5
Topological Polar Surface Area132
Hydrogen Bond Donor Count2
Hydrogen Bond Acceptor Count8
Rotatable Bond Count11
Heavy Atom Count46
Formal Charge0
Complexity1040
SMILES
CN(C)C=NC1=NC2=C(C(=O)N1)N=CN2[C@H]3C[C@@H]([C@H](O3)COC(C4=CC=CC=C4)(C5=CC=C(C=C5)OC)C6=CC=C(C=C6)OC)O
InChI
InChI=1S/C34H36N6O6/c1-39(2)20-36-33-37-31-30(32(42)38-33)35-21-40(31)29-18-27(41)28(46-29)19-45-34(22-8-6-5-7-9-22,23-10-14-25(43-3)15-11-23)24-12-16-26(44-4)17-13-24/h5-17,20-21,27-29,41H,18-19H2,1-4H3,(H,37,38,42)/t27-,28+,29+/m0/s1
InChIKey
YTRIMRXIMVGPAL-ZGIBFIJWSA-N
Chemical Structure
2D Structure
2D structure of 5'-O-DMT-N2-DMF-dG
CAS: 40094-22-2
CID: 136407412
Formula: C34H36N6O6
MW: 624.7
Interactive 3D Structure
Loading 3D structure...
View on PubChemRaw 3D data
Computed Properties
PropertyValue
Molecular Weight624.7
XLogP33.5
Hydrogen Bond Donor Count2
Hydrogen Bond Acceptor Count8
Rotatable Bond Count11
Exact Mass624.26963289
Monoisotopic Mass624.26963289
Topological Polar Surface Area132 Ų
Heavy Atom Count46
Formal Charge0
Complexity1040
Isotope Atom Count0
Defined Atom Stereocenter Count3
Undefined Atom Stereocenter Count0
Defined Bond Stereocenter Count0
Undefined Bond Stereocenter Count1
Covalently-Bonded Unit Count1
Compound Is CanonicalizedYes

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