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5-Methyl-2'-deoxycytidine

CAT: 0013-GTR19167589-01Size: 1 ml x 10 mM (in DMSO)Dry Ice: NoHazardous: No
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CAT#:0013-GTR19167589-01Size:1 ml x 10 mM (in DMSO)
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24/48H Stock Items & 2 to 6 Weeks non Stock Items.
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Description
5-Methyl-2'-deoxycytidine (5-MedCyd) is a modified nucleoside that, upon integration into single-stranded DNA, can function as a cis-acting signal for de novo methylation. This compound is utilized in epigenetics research to study DNA methylation mechanisms in both cellular and biochemical assays.
CAS Number
838-07-3
Product Name Alternative
Human Endogenous Metabolite, Inhibitor, Endogenous Metabolite, EndogenousMetabolite, inhibit, 5 Methyl 2' deoxycytidine, 5-Methyldeoxycytidine, 5MedCyd, 5-Methyl-2'-deoxycytidine, 5Methyl2'deoxycytidine, DNMTs, DNA methylation, DNA Methyltransferase, DNA methyltransferase (DNMT), DNA MTases, DNAMethyltransferase
Field of Research
Epigenetics & Chromatin, Metabolism Research
Purity
99.18% (May vary between batches)
Solubility
10% DMSO+40% PEG300+5% Tween 80+45% Saline:2 mg/mL (8.29 mM) ; DMSO:48 mg/mL (198.97 mM)
Smiles
Cc1cn ([C@H]2C[C@H] (O) [C@@H] (CO) O2) c (=O) nc1N
Molecular Formula
C10H15N3O4
Molecular Weight
241.24
Storage Conditions
-20°C
Notes
For research use only.

Chemical Information

5-Methyl-2'-deoxycytidine

5-methyl-2'-deoxycytidine is a 2'-deoxycytidine.

CAS Number838-07-3
PubChem CID440055
IUPAC Name4-amino-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-5-methylpyrimidin-2-one
Molecular FormulaC10H15N3O4
Molecular Weight241.24
XLogP-1.4
Topological Polar Surface Area108
Hydrogen Bond Donor Count3
Hydrogen Bond Acceptor Count4
Rotatable Bond Count2
Heavy Atom Count17
Formal Charge0
Complexity393
SMILES
CC1=CN(C(=O)N=C1N)[C@H]2C[C@@H]([C@H](O2)CO)O
InChI
InChI=1S/C10H15N3O4/c1-5-3-13(10(16)12-9(5)11)8-2-6(15)7(4-14)17-8/h3,6-8,14-15H,2,4H2,1H3,(H2,11,12,16)/t6-,7+,8+/m0/s1
InChIKey
LUCHPKXVUGJYGU-XLPZGREQSA-N
Chemical Structure
2D Structure
2D structure of 5-Methyl-2'-deoxycytidine
CAS: 838-07-3
CID: 440055
Formula: C10H15N3O4
MW: 241.24
Interactive 3D Structure
Loading 3D structure...
View on PubChemRaw 3D data
Computed Properties
PropertyValue
Molecular Weight241.24
XLogP3-1.4
Hydrogen Bond Donor Count3
Hydrogen Bond Acceptor Count4
Rotatable Bond Count2
Exact Mass241.10625597
Monoisotopic Mass241.10625597
Topological Polar Surface Area108 Ų
Heavy Atom Count17
Formal Charge0
Complexity393
Isotope Atom Count0
Defined Atom Stereocenter Count3
Undefined Atom Stereocenter Count0
Defined Bond Stereocenter Count0
Undefined Bond Stereocenter Count0
Covalently-Bonded Unit Count1
Compound Is CanonicalizedYes

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