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Cyanine 5 azide

CAT: 0804-HY-W749217ASize: 1 EachDry Ice: NoHazardous: No
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Description
Cyanine 3.5 azide is a cyanine dye functionalized with an azide. Cyanine 3.5 azide is a click chemistry reagent, it contains an Azide group and can undergo copper-catalyzed azide-alkyne cycloaddition reaction (CuAAc) with molecules containing Alkyne groups. It can also undergo strain-promoted alkyne-azide cycloaddition (SPAAC) reactions with molecules containing DBCO or BCN groups (Ex/Em = 633/670 nm) .
CAS Number
2204261-66-3
UNSPSC
12352005
Target
Fluorescent Dye
Related Pathways
Others
Field of Research
Others
Smiles
[N-]=[N+]=NCCCNC(CCCCC[N+]1=C(/C=C/C=C/C=C2C(C)(C3=CC=CC=C3N\2C)C)C(C)(C)C4=CC=CC=C14)=O.[Cl-]
Molecular Formula
C35H45ClN6O
Molecular Weight
601.22
Shipping Conditions
Room temperature
Scientific Category
Dye Reagents
Clinical Information
No Development Reported

Chemical Information

Cyanine5 azide
CAS Number2204261-66-3
PubChem CID146156057
IUPAC NameN-(3-azidopropyl)-6-[3,3-dimethyl-2-[5-(1,3,3-trimethylindol-1-ium-2-yl)penta-2,4-dienylidene]indol-1-yl]hexanamide chloride
Molecular FormulaC35H45ClN6O
Molecular Weight601.2
Topological Polar Surface Area49.7
Hydrogen Bond Donor Count1
Hydrogen Bond Acceptor Count5
Rotatable Bond Count13
Heavy Atom Count43
Formal Charge0
Complexity1110
SMILES
CC1(C2=CC=CC=C2[N+](=C1C=CC=CC=C3C(C4=CC=CC=C4N3CCCCCC(=O)NCCCN=[N+]=[N-])(C)C)C)C.[Cl-]
InChI
InChI=1S/C35H44N6O.ClH/c1-34(2)27-17-11-13-19-29(27)40(5)31(34)21-8-6-9-22-32-35(3,4)28-18-12-14-20-30(28)41(32)26-15-7-10-23-33(42)37-24-16-25-38-39-36;/h6,8-9,11-14,17-22H,7,10,15-16,23-26H2,1-5H3;1H
InChIKey
QENDFXAAWUTRRV-UHFFFAOYSA-N
Chemical Structure
2D Structure
2D structure of Cyanine5 azide
CAS: 2204261-66-3
CID: 146156057
Formula: C35H45ClN6O
MW: 601.2
Interactive 3D Structure
Loading 3D structure...
View on PubChemRaw 3D data
Computed Properties
PropertyValue
Molecular Weight601.2
Hydrogen Bond Donor Count1
Hydrogen Bond Acceptor Count5
Rotatable Bond Count13
Exact Mass600.3343378
Monoisotopic Mass600.3343378
Topological Polar Surface Area49.7 Ų
Heavy Atom Count43
Formal Charge0
Complexity1110
Isotope Atom Count0
Defined Atom Stereocenter Count0
Undefined Atom Stereocenter Count0
Defined Bond Stereocenter Count0
Undefined Bond Stereocenter Count3
Covalently-Bonded Unit Count2
Compound Is CanonicalizedYes

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Alternative Products

CatalogName
T212132-01Cyanine 5 azide
CA1930-01Cyanine 3 azide
GTR19340406-01Cyanine 3.5 azide
GTR19347116-01Azide cyanine dye 728
970-AATCyanine 3 azide [equivalent to Cy3® azide]
163-AATCyanine 7 azide [equivalent to Cy7® azide]
153-AATCyanine 5 azide [equivalent to Cy5® azide]
178-AATCyanine 5.5 azide [equivalent to Cy5.5® azide]
981-AATCyanine 3.5 azide [equivalent to Cy3.5® azide]
MBS615311-01Cyanine

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