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Perylene dU phosphoramidite

CAT: 0804-HY-172508Size: 1 EachDry Ice: NoHazardous: No
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Description
Perylene dU phosphoramidite is a bright and extremely photostable fluorescent polycyclic aromatic hydrocarbon (PAH) label with a quantum yield approaching quantitative. Due to the low lifetime of fluorescence, this probe does not form excimers.With this phosphoramidite, perylene can be introduced into DNA by automated oligonucleotide synthesis.
CAS Number
908117-78-2
UNSPSC
12171500
Target
Fluorescent Dye
Related Pathways
Others
Field of Research
Others
Smiles
COC(C=C1)=CC=C1C(C2=CC=C(C=C2)OC)(C3=CC=CC=C3)OC[C@@H]4[C@@H](OP(OCCC#N)N(C(C)C)C(C)C)C[C@H](N5C=C(C(NC5=O)=O)C#CC6=C7C8=C(C9=CC=CC%10=C9C(C8=CC=C7)=CC=C%10)C=C6)O4
Molecular Formula
C61H57N4O8P
Molecular Weight
1005.10
Shipping Conditions
Room temperature
Scientific Category
Dye Reagents
Clinical Information
No Development Reported

Chemical Information

Perylene dU phosphoramidite
CAS Number908117-78-2
PubChem CID172945112
IUPAC Name3-[[(2R,3S,5R)-2-[[bis(4-methoxyphenyl)-phenylmethoxy]methyl]-5-[2,4-dioxo-5-(2-perylen-3-ylethynyl)pyrimidin-1-yl]oxolan-3-yl]oxy-[di(propan-2-yl)amino]phosphanyl]oxypropanenitrile
Molecular FormulaC61H57N4O8P
Molecular Weight1005.1
XLogP11.1
Topological Polar Surface Area132
Hydrogen Bond Donor Count1
Hydrogen Bond Acceptor Count10
Rotatable Bond Count19
Heavy Atom Count74
Formal Charge0
Complexity2030
SMILES
CC(C)N(C(C)C)P(OCCC#N)O[C@H]1C[C@@H](O[C@@H]1COC(C2=CC=CC=C2)(C3=CC=C(C=C3)OC)C4=CC=C(C=C4)OC)N5C=C(C(=O)NC5=O)C#CC6=C7C=CC=C8C7=C(C=C6)C9=CC=CC1=C9C8=CC=C1
InChI
InChI=1S/C61H57N4O8P/c1-39(2)65(40(3)4)74(71-35-13-34-62)73-54-36-56(72-55(54)38-70-61(44-16-8-7-9-17-44,45-25-29-47(68-5)30-26-45)46-27-31-48(69-6)32-28-46)64-37-43(59(66)63-60(64)67)23-22-41-24-33-53-51-20-11-15-42-14-10-19-50(57(42)51)52-21-12-18-49(41)58(52)53/h7-12,14-21,24-33,37,39-40,54-56H,13,35-36,38H2,1-6H3,(H,63,66,67)/t54-,55+,56+,74?/m0/s1
InChIKey
ONJKXHBAUKBXDW-IRWZCRFQSA-N
Chemical Structure
2D Structure
2D structure of Perylene dU phosphoramidite
CAS: 908117-78-2
CID: 172945112
Formula: C61H57N4O8P
MW: 1005.1
Interactive 3D Structure
Loading 3D structure...
View on PubChemRaw 3D data
Computed Properties
PropertyValue
Molecular Weight1005.1
XLogP311.1
Hydrogen Bond Donor Count1
Hydrogen Bond Acceptor Count10
Rotatable Bond Count19
Exact Mass1004.39140179
Monoisotopic Mass1004.39140179
Topological Polar Surface Area132 Ų
Heavy Atom Count74
Formal Charge0
Complexity2030
Isotope Atom Count0
Defined Atom Stereocenter Count3
Undefined Atom Stereocenter Count1
Defined Bond Stereocenter Count0
Undefined Bond Stereocenter Count0
Covalently-Bonded Unit Count1
Compound Is CanonicalizedYes

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