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5-ROX, SE

CAT: 0013-GTR19351067-06Size: 100 mgDry Ice: NoHazardous: No
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CAT#:0013-GTR19351067-06Size:100 mg
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Description
5-ROX, SE (5-Carboxy-X-rhodamine, succinimidyl ester, single isomer) is a fluorescent dye reagent used to prepare charge-modified, dye-labeled ddNTPs for "direct-load" DNA sequencing. It enables efficient Sanger sequencing and is applicable in various in vitro genetic analysis and fragment analysis applications.
CAS Number
209734-74-7
Purity
95.00% (May vary between batches)
Molecular Weight
631.68
Storage Conditions
-20°C
Notes
For research use only.

Chemical Information

5-Carboxy-X-rhodamine N-succinimidyl ester
CAS Number209734-74-7
PubChem CID2762608
IUPAC Name5-(2,5-dioxopyrrolidin-1-yl)oxycarbonyl-2-(3-oxa-23-aza-9-azoniaheptacyclo[17.7.1.15,9.02,17.04,15.023,27.013,28]octacosa-1(27),2(17),4,9(28),13,15,18-heptaen-16-yl)benzoate
Molecular FormulaC37H33N3O7
Molecular Weight631.7
XLogP3.9
Topological Polar Surface Area119
Hydrogen Bond Donor Count0
Hydrogen Bond Acceptor Count8
Rotatable Bond Count4
Heavy Atom Count47
Formal Charge0
Complexity1490
SMILES
C1CC2=CC3=C(C4=C2N(C1)CCC4)OC5=C6CCC[N+]7=C6C(=CC5=C3C8=C(C=C(C=C8)C(=O)ON9C(=O)CCC9=O)C(=O)[O-])CCC7
InChI
InChI=1S/C37H33N3O7/c41-29-11-12-30(42)40(29)47-37(45)22-9-10-23(26(19-22)36(43)44)31-27-17-20-5-1-13-38-15-3-7-24(32(20)38)34(27)46-35-25-8-4-16-39-14-2-6-21(33(25)39)18-28(31)35/h9-10,17-19H,1-8,11-16H2
InChIKey
BTTBJYLMDASSAS-UHFFFAOYSA-N
Chemical Structure
2D Structure
2D structure of 5-Carboxy-X-rhodamine N-succinimidyl ester
CAS: 209734-74-7
CID: 2762608
Formula: C37H33N3O7
MW: 631.7
Interactive 3D Structure
Loading 3D structure...
View on PubChemRaw 3D data
Computed Properties
PropertyValue
Molecular Weight631.7
XLogP33.9
Hydrogen Bond Donor Count0
Hydrogen Bond Acceptor Count8
Rotatable Bond Count4
Exact Mass631.23185040
Monoisotopic Mass631.23185040
Topological Polar Surface Area119 Ų
Heavy Atom Count47
Formal Charge0
Complexity1490
Isotope Atom Count0
Defined Atom Stereocenter Count0
Undefined Atom Stereocenter Count0
Defined Bond Stereocenter Count0
Undefined Bond Stereocenter Count0
Covalently-Bonded Unit Count1
Compound Is CanonicalizedYes

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