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CypHer 5

CAT: 0013-GTR19340080-01Size: 50 mgDry Ice: NoHazardous: No
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CAT#:0013-GTR19340080-01Size:50 mg
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Description
CypHer 5 is a pH-sensitive cyanine dye with excitation/emission maxima at 644/664 nm, functioning as an environmental-sensitive fluorophore. It is widely used as a lysosomal pH sensor in live-cell imaging and intracellular trafficking studies, applicable for both in vitro and in vivo research.
CAS Number
312961-83-4
Molecular Weight
628.76
Storage Conditions
-20°C
Notes
For research use only.

Chemical Information

2-[5-(3,3-Dimethyl-5-sulfo-3H-indol-2-yl)-2,4-pentadien-1-ylidene]-2,3-dihydro-3,3-dimethyl-5-sulfo-1H-indole-1-hexanoic acid
CAS Number312961-83-4
PubChem CID74932841
IUPAC Name6-[2-[5-(3,3-dimethyl-5-sulfoindol-2-yl)penta-2,4-dienylidene]-3,3-dimethyl-5-sulfoindol-1-yl]hexanoic acid
Molecular FormulaC31H36N2O8S2
Molecular Weight628.8
XLogP4.4
Topological Polar Surface Area178
Hydrogen Bond Donor Count3
Hydrogen Bond Acceptor Count10
Rotatable Bond Count11
Heavy Atom Count43
Formal Charge0
Complexity1380
SMILES
CC1(C2=C(C=CC(=C2)S(=O)(=O)O)N=C1C=CC=CC=C3C(C4=C(N3CCCCCC(=O)O)C=CC(=C4)S(=O)(=O)O)(C)C)C
InChI
InChI=1S/C31H36N2O8S2/c1-30(2)23-19-21(42(36,37)38)14-16-25(23)32-27(30)11-7-5-8-12-28-31(3,4)24-20-22(43(39,40)41)15-17-26(24)33(28)18-10-6-9-13-29(34)35/h5,7-8,11-12,14-17,19-20H,6,9-10,13,18H2,1-4H3,(H,34,35)(H,36,37,38)(H,39,40,41)
InChIKey
VRQVBVFJEIJSIE-UHFFFAOYSA-N
Chemical Structure
2D Structure
2D structure of 2-[5-(3,3-Dimethyl-5-sulfo-3H-indol-2-yl)-2,4-pentadien-1-ylidene]-2,3-dihydro-3,3-dimethyl-5-sulfo-1H-indole-1-hexanoic acid
CAS: 312961-83-4
CID: 74932841
Formula: C31H36N2O8S2
MW: 628.8
Interactive 3D Structure
Loading 3D structure...
View on PubChemRaw 3D data
Computed Properties
PropertyValue
Molecular Weight628.8
XLogP34.4
Hydrogen Bond Donor Count3
Hydrogen Bond Acceptor Count10
Rotatable Bond Count11
Exact Mass628.19130846
Monoisotopic Mass628.19130846
Topological Polar Surface Area178 Ų
Heavy Atom Count43
Formal Charge0
Complexity1380
Isotope Atom Count0
Defined Atom Stereocenter Count0
Undefined Atom Stereocenter Count0
Defined Bond Stereocenter Count0
Undefined Bond Stereocenter Count3
Covalently-Bonded Unit Count1
Compound Is CanonicalizedYes

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sc-77078-PRCypher (h) -PR
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