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5'-DMTr-dC (Ac) -methylphosphonamidite

CAT: 0931-TNU1465-01Size: 10 mgDry Ice: NoHazardous: No
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CAT#:0931-TNU1465-01Size:10 mg
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24/48H Stock Items & 2 to 6 Weeks non Stock Items.
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CAS Number
178094-78-5
Target
Others, DNA/RNA Synthesis
Related Pathways
DNA Damage/DNA Repair, Cell Cycle/Checkpoint, Others
Bioactivity
5'-DMTr-dC (Ac) -methylphosphonamidite is a Nucleoside Derivative - phosphonamidite.
Smiles
C(OC[C@@H]1[C@@H](OP(N(C(C)C)C(C)C)C)C[C@@H](O1)N2C(=O)N=C(NC(C)=O)C=C2)(C3=CC=C(OC)C=C3)(C4=CC=C(OC)C=C4)C5=CC=CC=C5
Molecular Formula
C39H49N4O7P
Molecular Weight
716.8
Shipping Conditions
Ice Packs
Storage Temperature
-20°C

Chemical Information

5'-DMTr-dC (Ac)-methylphosphonamidite
CAS Number178094-78-5
PubChem CID11104516
IUPAC NameN-[1-[(2R,4S,5R)-5-[[bis(4-methoxyphenyl)-phenylmethoxy]methyl]-4-[[di(propan-2-yl)amino]-methylphosphanyl]oxyoxolan-2-yl]-2-oxopyrimidin-4-yl]acetamide
Molecular FormulaC39H49N4O7P
Molecular Weight716.8
XLogP5.4
Topological Polar Surface Area111
Hydrogen Bond Donor Count1
Hydrogen Bond Acceptor Count8
Rotatable Bond Count15
Heavy Atom Count51
Formal Charge0
Complexity1160
SMILES
CC(C)N(C(C)C)P(C)O[C@H]1C[C@@H](O[C@@H]1COC(C2=CC=CC=C2)(C3=CC=C(C=C3)OC)C4=CC=C(C=C4)OC)N5C=CC(=NC5=O)NC(=O)C
InChI
InChI=1S/C39H49N4O7P/c1-26(2)43(27(3)4)51(8)50-34-24-37(42-23-22-36(40-28(5)44)41-38(42)45)49-35(34)25-48-39(29-12-10-9-11-13-29,30-14-18-32(46-6)19-15-30)31-16-20-33(47-7)21-17-31/h9-23,26-27,34-35,37H,24-25H2,1-8H3,(H,40,41,44,45)/t34-,35+,37+,51?/m0/s1
InChIKey
MSIKKOYFNOZJGV-LWVNILPLSA-N
Chemical Structure
2D Structure
2D structure of 5'-DMTr-dC (Ac)-methylphosphonamidite
CAS: 178094-78-5
CID: 11104516
Formula: C39H49N4O7P
MW: 716.8
Interactive 3D Structure
Loading 3D structure...
View on PubChemRaw 3D data
Computed Properties
PropertyValue
Molecular Weight716.8
XLogP35.4
Hydrogen Bond Donor Count1
Hydrogen Bond Acceptor Count8
Rotatable Bond Count15
Exact Mass716.33388691
Monoisotopic Mass716.33388691
Topological Polar Surface Area111 Ų
Heavy Atom Count51
Formal Charge0
Complexity1160
Isotope Atom Count0
Defined Atom Stereocenter Count3
Undefined Atom Stereocenter Count1
Defined Bond Stereocenter Count0
Undefined Bond Stereocenter Count0
Covalently-Bonded Unit Count1
Compound Is CanonicalizedYes

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HY-1540365′-DMTr-dC (Ac) -Methylphosphonamidite
GTR19214065-015'-DMTr-dC (Ac) -methylphosphonamidite
MBS58270565'-DMTr-dC (Ac)-methylphosphonamidite
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PA020-1KDMTr-2'-F-dC (Ac) -3'-CE-Phosphoramidite
PA276-100DMTr-2'-F-dC (Ac) -3'-PS2-Amidite
PA336-1KDMTr-2'-F-dC (Ac) -3'- (D) -DPSE-Phosphoramidite
PA337-10DMTr-2'-F-dC (Ac) -3'- (L) -DPSE-Phosphoramidite
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